Package: extBatchMarking
Type: Package
Title: Extended Batch Marking Models
Version: 1.1.0
Date: 2024-10-04
Maintainer: Kehinde Olobatuyi <olobatuyikenny@uvic.ca>
Authors@R: 
    c(person(given = "Kehinde",
            family = "Olobatuyi",
            role = c("aut", "cre"),
            email = "olobatuyikenny@uvic.ca",
            comment = c(ORCID = "0000-0002-4635-7895")),
      person(given = "Simon",
            family = "Johns",
            role = c("aut"),
            email = "simon737@outlook.com"),      
      person(given = "Matthew RP",
            family = "Parker",
            role = c("aut"),
            email = "mrparker909@gmail.com",
            comment = c(ORCID = "0000-0003-3021-7959")),
      person(given = "Steve",
            family = "Hof",
            role = c("aut"),
            email = "steven.Hof@icloud.com"),
      person(given = "Laura LE",
            family = "Cowen",
            role = c("aut"),
            email = "lcowen@uvic.ca",
            comment = c(ORCID = "0000-0002-0853-1450")) )
Description: A system for batch-marking data analysis to estimate
        survival probabilities, capture probabilities, and enumerate
        the population abundance for both marked and unmarked
        individuals. The estimation of only marked individuals can be
        achieved through the batchMarkOptim() function. Similarly, the
        combined marked and unmarked can be achieved through the
        batchMarkUnmarkOptim() function. The algorithm was also
        implemented for the hidden Markov model encapsulated in
        batchMarkUnmarkOptim() to estimate the abundance of both marked
        and unmarked individuals in the population. The package is
        based on the paper: "Hidden Markov Models for Extended Batch
        Data" of Cowen et al. (2017) <doi:10.1111/biom.12701>.
License: AGPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
LinkingTo: Rcpp, RcppArmadillo
Imports: doParallel, foreach, optimbase, Rcpp, parallel
Depends: R (>= 4.0)
LazyData: true
Suggests: testthat (>= 3.0.0), knitr
Config/testthat/edition: 3
URL: https://github.com/Olobatuyi/extBatchMarking
BugReports: https://github.com/Olobatuyi/extBatchMarking/issues
Repository: https://olobatuyi.r-universe.dev
Date/Publication: 2025-06-07 01:56:18 UTC
RemoteUrl: https://github.com/olobatuyi/extbatchmarking_cov
RemoteRef: HEAD
RemoteSha: aad4d3bef205480a434eb77ccddac3eacb48978f
NeedsCompilation: yes
Packaged: 2026-07-03 05:18:26 UTC; root
Author: Kehinde Olobatuyi [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4635-7895>),
  Simon Johns [aut],
  Matthew RP Parker [aut] (ORCID:
    <https://orcid.org/0000-0003-3021-7959>),
  Steve Hof [aut],
  Laura LE Cowen [aut] (ORCID: <https://orcid.org/0000-0002-0853-1450>)